Genetic Stock Identification of Coho Salmon (at-sea analysis) from the 2019 Gulf of Alaska International Year of the Salmon Expedition

10.1101/2021.05.27.445905

Genetic stock identification data by single nucleotide polymorphism (SNP) sequencing conducted at-sea for coho salmon collected in the Northeast Pacific Ocean. These data were collected as part of the International Year of the Salmon (IYS) Gulf of Alaska High Seas Expedition conducted in February and March 2019, to further improve the understanding of factors impacting salmon early marine winter survival. In-field genotype-by-sequencing technology was used for genetic stock identification by single nucleotide polymorphism sequencing (SNP GSI) of salmon utilizing the Oxford Nanopore Technologies minION third generation sequencer. The field-based results will be validated with results replicated at the genomics lab at the Pacific Biological Station, DFO, Nanaimo, BC on the established Ion-Torrent based workflow as well as the data read from one of the coded-wire tagged individuals included in this analysis.

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Licence: Creative Commons Attribution 4.0

Data and Resources

Citation

Keywords

Dataset extent

Metadata Reference Date(s) September 11, 2023 (Publication)
September 10, 2024 (Revision)
Data Reference Date(s) February 18, 2019 (Creation)
May 19, 2021 (Publication)
Frequency of Update As Needed

Responsible Party 1
Affiliation
North Pacific Anadromous Fish Commission ROR logo
Email
secretariat@npafc.org
Role
Publisher
Responsible Party 2
Name
Deeg, Christoph
Affiliation
University of British Columbia ROR logo
Email
Christoph.Deeg@dfo-mpo.gc.ca
Role
  • Author
  • Custodian
  • Owner
Responsible Party 3
Name
Neville, Chrys
Affiliation
Fisheries and Oceans Canada ROR logo
Email
Chrys.Neville@dfo-mpo.gc.ca
Role
Author
Responsible Party 4
Name
Waters, Charlie
Affiliation
National Oceanic and Atmospheric Administration ROR logo
Email
charlie.waters@noaa.gov
Role
Author
Responsible Party 5
Name
Beacham, Terry
Affiliation
Fisheries and Oceans Canada ROR logo
Email
Terry.Beacham@dfo-mpo.gc.ca
Role
Author
Responsible Party 6
Name
Urawa, Shigehiko
Affiliation
Tohoku National Fisheries Research Institute
Email
urawa@affrc.go.jp
Role
Author
Responsible Party 7
Name
Beamish, Richard
Affiliation
Fisheries and Oceans Canada ROR logo
Email
rabeamish@shaw.ca
Role
Author
Responsible Party 8
Name
Miller-Saunders, Kristi
Affiliation
Fisheries and Oceans Canada ROR logo
Email
Kristi.Saunders@dfo-mpo.gc.ca
Role
Principal Investigator
Responsible Party 9
Affiliation
Hakai Institute ROR logo
Email
data@hakai.org
Role
Distributor

Field Value
Ocean Variables Fish abundance and distribution
Scope Dataset
Status Completed
Maintenance Note Generated from https://hakaiinstitute.github.io/hakai-metadata-entry-form#/en/iys/MgLSkk3m0iXQyIRXEu0UL6y0BOo1/-Mh_6ITOOnz_bd7lmQEC
Spatial Extent { "coordinates": [ [ [ -128.513667, 48.311 ], [ -143.000167, 56.668667 ], [ -147.503333, 56.667333 ], [ -147.500667, 47.668333 ], [ -136.997, 47.666833 ], [ -129.9175, 48.191167 ], [ -128.513667, 48.311 ] ] ], "type": "Polygon" }
North Bounding Latitude 47.666833
South Bounding Latitude 56.668667
East Bounding Longitude -128.513667
West Bounding Longitude -147.503333
Temporal Extent
Begin
2019-02-18
End
2019-03-14
Vertical Extent
Min
0.0
Max
40.0
Default Locale English
Citation identifier
Code
https://doi.org/10.1101/2021.05.27.445905
Included in Data Catalogue
Included in Data Catalogue 1
Name
CIOOS - Pacific Catalogue
Description
Home of Canada's Pacific Ocean Data
URL
https://catalogue.cioospacific.ca
Included in Data Catalogue 2
Name
North Pacific Anadromous Fish Commission
Description
 
URL
https://data.npafc.org